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Sourcecode: bauble version File versions


# default report formatter package
The PDF report generator module.

This module takes a list of objects, get all the plants from the
objects, converts them to the ABCD XML format, transforms the ABCD
data to an XSL formatting stylesheet and uses a XSL-PDF renderer to
convert the stylesheet to PDF.
import shutil
import sys
import os
import tempfile
import traceback

import gtk
from sqlalchemy import *
from sqlalchemy.orm import *

import bauble
from bauble.utils.log import debug
import bauble.utils as utils
import bauble.utils.desktop as desktop
import bauble.paths as paths
from bauble.i18n import *
from bauble.plugins.plants.species import Species
from bauble.plugins.garden.plant import Plant
from bauble.plugins.garden.accession import Accession
from bauble.plugins.abcd import create_abcd, ABCDAdapter, ABCDElement
from bauble.plugins.report import get_all_plants, get_all_species, \
     get_all_accessions, FormatterPlugin, SettingsBox

if sys.platform == "win32":
    fop_cmd = 'fop.bat'
    fop_cmd = 'fop'

# Bugs:
# https://bugs.launchpad.net/bauble/+bug/104963 (check for PDF renderers on PATH)

# TODO: need to make sure we can't select the OK button if we haven't selected
# a value for everything

# TODO: use which() to search the path for a known renderer, could do this in
# task so that it's non blocking, should cache the values in the prefs and
# check that they are still valid when we open the report UI up again
#def which(e):
#    return ([os.path.join(p, e) for p in os.environ['PATH'].split(os.pathsep) if os.path.exists(os.path.join(p, e))] + [None])[0]

# TODO: support FOray, see http://www.foray.org/
renderers_map = {'Apache FOP': fop_cmd + \
                               ' -fo %(fo_filename)s -pdf %(out_filename)s',
                 'XEP': 'xep -fo %(fo_filename)s -pdf %(out_filename)s',
#                 'xmlroff': 'xmlroff -o %(out_filename)s %(fo_filename)s',
#                 'Ibex for Java': 'java -cp /home/brett/bin/ibex-3.9.7.jar \
#         ibex.Run -xml %(fo_filename)s -pdf %(out_filename)s'
default_renderer = 'Apache FOP'

plant_source_type = _('Plant/Clone')
accession_source_type = _('Accession')
species_source_type = _('Species')
default_source_type = plant_source_type

00069 class SpeciesABCDAdapter(ABCDAdapter):
    An adapter to convert a Species to an ABCD Unit, the SpeciesABCDAdapter
    does not create a valid ABCDUnit since we can't provide the required UnitID
    def __init__(self, species):
        super(SpeciesABCDAdapter, self).__init__(species)
        self.species = species

    def get_UnitID(self):
        # **** This is makes the ABCD data NOT valid ABCD but it does make
        # it work for creating reports without including the accession or
        # plant code
        return ""

    def get_family(self):
        return utils.xml_safe_utf8(self.species.genus.family)

    def get_FullScientificNameString(self, authors=True):
        return Species.str(self.species, authors=authors,markup=False)

    def get_GenusOrMonomial(self):
        return utils.xml_safe_utf8(str(self.species.genus))

    def get_FirstEpithet(self):
        return utils.xml_safe_utf8(str(self.species.sp))

    def get_AuthorTeam(self):
        author = self.species.sp_author
        if author is None:
            return None
            return utils.xml_safe_utf8(author)

    def get_InformalNameString(self):
        vernacular_name = self.species.default_vernacular_name
        if vernacular_name is None:
            return None
            return utils.xml_safe_utf8(vernacular_name)

    def extra_elements(self, unit):
        # distribution isn't in the ABCD namespace so it should create an
        # invalid XML file
        etree.SubElement(unit, 'distribution').text=\
        if self.species.notes is not None:
            ABCDElement(unit, 'Notes',

00120 class PlantABCDAdapter(SpeciesABCDAdapter):
    An adapter to convert a Plant to an ABCD Unit
    def __init__(self, plant):
        super(PlantABCDAdapter, self).__init__(plant.accession.species)
        self.plant = plant

    def get_UnitID(self):
        return utils.xml_safe_utf8(str(self.plant))

    def extra_elements(self, unit):
        bg_unit = ABCDElement(unit, 'BotanicalGardenUnit')
        ABCDElement(bg_unit, 'LocationInGarden',
        if self.plant.notes is not None:
            ABCDElement(unit, 'Notes',
        super(PlantABCDAdapter, self).extra_elements(unit)

00143 class AccessionABCDAdapter(SpeciesABCDAdapter):
    An adapter to convert a Plant to an ABCD Unit
    def __init__(self, accession):
        super(AccessionABCDAdapter, self).__init__(accession.species)
        self.accession = accession

    def get_UnitID(self):
        return utils.xml_safe_utf8(str(self.accession))

    # TODO: these values should probably alse be added for the PlantABCDAdapter
    def donation_extra_elements(self, unit):
    def collection_extra_elements(self, unit):
    def extra_elements(self, unit):
        if self.accession.notes is not None:
            ABCDElement(unit, 'Notes',
        if self.accession.source_type == 'Collection':
            # see ABCD/Unit/Gathering, CollectorsFieldNumber
        elif self.accession.source_type == 'Donation':
            # see DonorCategory, DecodedDonorInstitute
            # TODO: what should we do here
        super(AccessionABCDAdapter, self).extra_elements(unit)

class SettingsBoxPresenter:

    def __init__(self, widgets):
        self.widgets = widgets
        model = gtk.ListStore(str)
        for name in renderers_map:

class DefaultFormatterSettingsBox(SettingsBox):

    def __init__(self, report_dialog=None, *args):
        super(DefaultFormatterSettingsBox, self).__init__(*args)
        self.widgets = utils.GladeWidgets(os.path.join(paths.lib_dir(),
                               "plugins", "report", 'default', 'gui.glade'))
        # keep a refefence to settings box so it doesn't get destroyed in
        # remove_parent()
        settings_box = self.widgets.settings_box
        self.presenter = SettingsBoxPresenter(self.widgets)

    def get_settings(self):
        return a dict of settings from the settings box gui
        return {'stylesheet': self.widgets.stylesheet_chooser.get_filename(),
                'renderer': self.widgets.renderer_combo.get_active_text(),
                'authors': self.widgets.author_check.get_active(),
                'private': self.widgets.private_check.get_active()}

    def update(self, settings):
        if 'stylesheet' in settings and settings['stylesheet'] != None:
        if 'renderer' not in settings:

        if 'source_type' not in settings:

        if 'authors' in settings:

        if 'private' in settings:

_settings_box = DefaultFormatterSettingsBox()

class DefaultFormatterPlugin(FormatterPlugin):

    title = _('Default')

    def install(cls, import_defaults=True):
      # copy default template files to user_dir
      templates = ['basic.xsl', 'labels.xsl', 'plant_list.xsl',
                 'plant_list_ex.xsl', 'small_labels.xsl']
        base_dir = os.path.join(paths.lib_dir(),
                         "plugins", "report", 'default')
      for template in templates:
          f = os.path.join(paths.user_dir(), template)
          if not os.path.exists(f):
            shutil.copy(os.path.join(base_dir, template), f)

    def get_settings_box():
        return DefaultFormatterSettingsBox()

    def format(objs, **kwargs):
#        debug('format(%s)' % kwargs)
        stylesheet = kwargs['stylesheet']
        authors = kwargs['authors']
        renderer = kwargs['renderer']
        source_type = kwargs['source_type']
        use_private = kwargs['private']
        error_msg = None
        if not stylesheet:
            error_msg = _('Please select a stylesheet.')
        elif not renderer:
            error_msg = _('Please select a a renderer')
        if error_msg is not None:
            utils.message_dialog(error_msg, gtk.MESSAGE_WARNING)
            return False

        fo_cmd = renderers_map[renderer]
        session = bauble.Session()

        # convert objects to ABCDAdapters depending on source type for
        # passing to create_abcd
        # TODO: do a natural sort instead of a standard cmp() sort
        adapted = []
        if source_type == plant_source_type:
            plants = list(get_all_plants(objs, session=session))
            plants.sort(cmp=lambda x, y: cmp(str(x), str(y)))
            if len(plants) == 0:
                utils.message_dialog(_('There are no plants in the search '
                                       'results.  Please try another search.'))
                return False
            for p in plants:
                if use_private:
                elif not p.accession.private:
        elif source_type == species_source_type:
            species = list(get_all_species(objs, session=session))
            species.sort(cmp=lambda x,y: cmp(str(x), str(y)))
            if len(species) == 0:
                utils.message_dialog(_('There are no species in the search '
                                       'results.  Please try another search.'))
                return False
            for s in species:
        elif source_type == accession_source_type:
            accessions = list(get_all_accessions(objs, session=session))
            accessions.sort(cmp=lambda x,y: cmp(str(x), str(y)))
            if len(accessions) == 0:
                utils.message_dialog(_('There are no accessions in the search '
                                       'results.  Please try another search.'))
                return False
            for a in accessions:
                if use_private:
                elif not a.private:
            raise NotImplementedError('unknown source type')

        if len(adapted) == 0:
            # nothing adapted....possibly everything was private
            # TODO: if everything was private and that is really why we got
            # here then it is probably better to show a dialog with a message
            # and raise and exception which appears as an error
            raise Exception('No objects could be adapted to ABCD units.')
        abcd_data = create_abcd(adapted, authors=authors, validate=False)


#        debug(etree.dump(abcd_data.getroot()))

        # create xsl fo file
        dummy, fo_filename = tempfile.mkstemp()
        style_etree = etree.parse(stylesheet)
        transform = etree.XSLT(style_etree)
        result = transform(abcd_data)
        fo_outfile = open(fo_filename, 'w')
        dummy, filename = tempfile.mkstemp()
        filename = '%s.pdf' % filename

        # TODO: checkout pyexpect for spawning processes

        # run the report to produce the pdf file, the command has to be
        # on the path for this to work
        fo_cmd = fo_cmd % ({'fo_filename': fo_filename,
                            'out_filename': filename})
#        print fo_cmd
#        debug(fo_cmd)
        # TODO: use popen to get output

#        print filename
        if not os.path.exists(filename):
            utils.message_dialog(_('Error creating the PDF file. Please ' \
                                   'ensure that your PDF formatter is ' \
                                   'properly installed.'), gtk.MESSAGE_ERROR)
            return False
            except OSError:
                utils.message_dialog(_('Could not open the report with the '\
                                       'default program. You can open the '\
                                       'file manually at %s') % filename)

        return True

# expose the formatter
    import lxml.etree as etree
except ImportError:
    utils.message_dialog('The <i>lxml</i> package is required for the '\
                         'default report plugins')
    formatter_plugin = DefaultFormatterPlugin

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